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 structural biologist


The Role of AI in Facilitating Interdisciplinary Collaboration: Evidence from AlphaFold

Zhao, Naixuan, Wei, Chunli, Zhang, Xinyan, Li, Jiang

arXiv.org Artificial Intelligence

The acceleration of artificial intelligence (AI) in science is recognized and many scholars have begun to explore its role in interdisciplinary collaboration. However, the mechanisms and extent of this impact are still unclear. This study, using AlphaFold's impact on structural biologists, examines how AI technologies influence interdisciplinary collaborative patterns. By analyzing 1,247 AlphaFold-related papers and 7,700 authors from Scopus, we employ bibliometric analysis and causal inference to compare interdisciplinary collaboration between AlphaFold adopters and non-adopters. Contrary to the widespread belief that AI facilitates interdisciplinary collaboration, our findings show that AlphaFold increased structural biology-computer science collaborations by just 0.48%, with no measurable effect on other disciplines. Specifically, AI creates interdisciplinary collaboration demands with specific disciplines due to its technical characteristics, but this demand is weakened by technological democratization and other factors. These findings demonstrate that artificial intelligence (AI) alone has limited efficacy in bridging disciplinary divides or fostering meaningful interdisciplinary collaboration.


Whither structural biologists?

#artificialintelligence

Between December 2020 and July 2021, several spectacular developments in the field of protein-structure prediction changed structural biology profoundly, and they are expected to have an impact on much of modern (molecular) biology, medicine, biochemistry and biotechnology. The unprecedented accuracy of blind protein-structure predictions produced by DeepMind's AlphaFold2 was revealed at the CASP 14 meeting in December 2020. In July 2021, this was followed by publication of the method and release of the code (Jumper et al., 2021). Simultaneously, a prediction method from the Baker lab that achieved similar accuracy was published (Baek et al., 2021). A week later, an additional publication described proteome-scale application of protein-structure prediction using AlphaFold2.


DeepMind's AI predicts structures for a vast trove of proteins

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The human mediator complex has long been one of the most challenging multi-protein systems for structural biologists to understand.Credit: Yuan He The human genome holds the instructions for more than 20,000 proteins. But only about one-third of those have had their 3D structures determined experimentally. And in many cases, those structures are only partially known. Now, a transformative artificial intelligence (AI) tool called AlphaFold, which has been developed by Google's sister company DeepMind in London, has predicted the structure of nearly the entire human proteome (the full complement of proteins expressed by an organism). In addition, the tool has predicted almost complete proteomes for various other organisms, ranging from mice and maize (corn) to the malaria parasite (see'Folding options').